id
String
uuid
String
A universally unique identifier for the clinical analysis.
description
String
The clinical analysis description.
type
Type
The type of the clinical analysis:
| SINGLE | |
| FAMILY | |
| CANCER | |
| COHORT | |
| AUTOCOMPARATIVE |
disorder
Disorder
Disorder.
files
List<File>
List of files with all VCF, BAM, ... used in this analysis.
proband
Individual
Proband individual.
family
Family
Family info, only exist when analysis type is FAMILY.
roleToProband
Map<String, familiarRelationship>
Familiar relationship:
| MOTHER | Mother. |
| FATHER | Father. |
| STEP_MOTHER | Mother. |
| STEP_FATHER | Father. |
| IDENTICAL_TWIN | Twin. |
| FRATERNAL_TWIN | Twin. |
| FULL_SIBLING | Sibling. |
| HALF_SIBLING | Sibling. |
| STEP_SIBLING | Sibling. |
| SISTER | Sister. |
| BROTHER | Brother. |
| STEP_SISTER | Sister. |
| STEP_BROTHER | Brother. |
| SON | Son. |
| DAUGHTER | Daughter. |
| CHILD_OF_UNKNOWN | Child. |
| UNCLE | Uncle. |
| AUNT | Aunt. |
| MATERNAL_AUNT | Aunt. |
| MATERNAL_UNCLE | Uncle. |
| PATERNAL_AUNT | Aunt. |
| PATERNAL_UNCLE | Uncle. |
| NEPHEW | Nephew. |
| NIECE | Niece. |
| GRANDFATHER | Grandfather. |
| GRANDMOTHER | Grandmother. |
| MATERNAL_GRANDMOTHER | Grandmother. |
| PATERNAL_GRANDMOTHER | Grandmother. |
| MATERNAL_GRANDFATHER | Grandfather. |
| PATERNAL_GRANDFATHER | Grandfather. |
| GREAT_GRANDFATHER | Great-grandfather. |
| GREAT_GRANDMOTHER | Great-grandmother. |
| DOUBLE_FIRST_COUSIN | Cousin. |
| COUSIN | Cousin. |
| MALE_COUSIN | Cousin. |
| FEMALE_COUSIN | Cousin. |
| SECOND_COUSIN | Cousin. |
| MALE_SECOND_COUSIN | Cousin. |
| FEMALE_SECOND_COUSIN | Cousin. |
| SPOUSE | Spouse. |
| HUSBAND | Husband. |
| OTHER | Other. |
| UNKNOWN | Unknown. |
| UNRELATED | Unrelated. |
| PROBAND | Proband. |
qualityControl
ClinicalAnalysisQc
Quality control.
interpretation
Interpretation
Primary interpretation. See the interpretation data model schema.
secondaryInterpretations
List<Interpretation>
consent
ClinicalConsent
Consent.
primaryFindings ConsentStatus | Consent for primary findings. |
secondaryFindings ConsentStatus | Consent for secondary findings. |
carrierFindings ConsentStatus | Consent for carrier findings. |
researchFindings ConsentStatus | Consent for research findings. |
analyst
ClinicalAnalysisAnalyst
Information about the analyst.
responsible String | Analyst. |
assignedBy String | A person who assigned the analyst. |
date String | Date. |
priority
Priority
Priority.
| URGENT | 1 |
| HIGH | 2 |
| MEDIUM | 3 |
| LOW | 4 |
flags
List<String>
status
CustomStatus
Clinical analysis status set by the user:
name String | Name. |
description String | Description. |
date String | Date. |
creationDate
String
modificationDate
String
dueDate
String
release
int
comments
List<Comment>
List of comments.
report
ClinicalAnalysisReport
alerts
List<Alert>
List of alerts.
author String | Author. | ||||||
date String | Date. | ||||||
message String | Message. | ||||||
risk Risk | Risk.
|
internal
ClinicalAnalysisInternal
Internal information.
status ClinicalAnalysisStatus | Clinical analysis internal status:
|
attributes
Map<String, Object>