Clinical Interpretation Data Model Schema

id

String

The interpretation ID.

uuid

String

A universally unique identifier for the interpretation.

description

String

The interpretation description.

clinicalAnalysisId

String

The clinical analysis ID.

methods

List<InterpretationMethod>

List of interpretation methods.

name

String

Interpretation method name, .e.g.: tiering, zetta, team,...

filters

Map<String, Object>

Filters.

panels

List<DiseasePanel>

Panels.

dependencies

List<Software>

List of software dependencies.

name String	Name.
version String	Version.
repository String	Repository.
commit String	Commit.
website String	Website.
params Map<String, String>	Parameters.

primaryFindings

List<ClinicalVariant>

List of primary findings. See clinical variant data model schema.

secondaryFindings

List<ClinicalVariant>

List of secondary findings. See clinical variant data model schema.

analyst

Analyst

Analyst carrying out the interpretation.

name

String

Name.

email

String

E-mail.

company

String

Company.

comments

List<Comment>

List of comments.

author String	Author.
type String	Type.
message String	Message.
date String	Date.

status

String

Status.

name

String

Name.

description

String

Description.

date

String

Date.

creationDate

String

Creation date.

modificationDate

String

Modification date.

version

int

Version.

attributes

Map<String, Object>

Map of attributes. Users can add custom information in this field. OpenCGA uses this field to store the ClinicalAnalysis object under the key OPENCGA_CLINICAL_ANALYSIS.

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Clinical Interpretation Data Model Schema