Index

Annotate

Custom annotation

Calculate Statistics

Define cohorts

Remove

Import

Export

Export statistics

Export statistics is an special case of export. Instead of export full variants, only the variant cohort statistics are exported.

As for variants export, there are multiple possible output formats:

• VCF : Standard VCF format without samples information, with the stats as values in the INFO column.

• TSV (Tab Separated Values). Simple format with each cohort in one column.

  TSV

  #CHR    POS    REF    ALT    ALL_AN    ALL_AC    ALL_AF    ALL_HET    ALL_HOM
  22    16050213    C    T    1000    1    0.001    0.002    0.0
  22    16050607    G    A    1000    2    0.002    0.004    0.0
  22    16050740    A    -    1000    1    0.001    0.002    0.0
  22    16050840    C    G    1000    13    0.013    0.026    0.0
  22    16051075    G    A    1000    2    0.002    0.004    0.0
  22    16051249    T    C    1000    91    0.091    0.162    0.01
  22    16051453    A    C    998    74    0.074    0.144    0.004
  22    16051453    A    G    926    2    0.002    0.144    0.004
  22    16051723    A    -    1000    12    0.012    0.024    0.0
  22    16051816    T    G    1000    2    0.002    0.004    0.0
  

• cellbase
• json