Alignment Stats Data Model Schema

fileId String
sampleId String
rawTotalSequences int
filteredSequences int
sequences int
isSorted int
firstFragments int
lastFragments int
readsMapped int
readsMappedAndPaired int
readsUnmapped int
readsProperlyPaired int
readsPaired int
readsDuplicated int
readsMq0 int
readsQcFailed int
nonPrimaryAlignments int
totalLength int
basesMapped int
basesTrimmed int
basesDuplicated int
mismatches int
errorRate Double
averageLength Double
maximumLength int
averageQuality Double
insertSizeAverage Double
insertSizeStandardDeviation Double
inwardOrientedPairs int
outwardOrientedPairs int
pairsWithOtherOrientation int
pairsOnDifferentChromosomes int