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result? Enum | Red, yellow and green |
variant VariantQc | Quality control on variant data. stats List<SampleVariantStats> | Sample variant stats. See sample variant stats data model. | files List<File> | List of files related to the variant data, e.g.: images. |
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alignment AlignmentQc | Quality control on alignment data. stats List<AlignmentStats> | Alignment stats. See alignment stats. | coverageStats LIst<CoverageStats>
| Coverage stats. fileId String | File ID. | sampleId String | Sample ID. | gene String | Gene name. | stats List<TranscriptCoverageStats> | transcriptId String | Transcript ID. | depths List<Float> | % coverage for 1x, 5x, 10x, 15x, 20x, 25x, 30x, 40x, 50x | lowCoverageThreshold int | Regions under this coverage depth threshold will be reported in the list lowCoverageRegions. Default value: 30. | lowCoverageRegions List<LowCoverageRegion> | Regions whose coverage depth is under the value lowCoverageThreshold. start int | Region start position. | end int | Region end position | meanDepth Float | Mean depth. | minimumDepth int | Minimum depth. |
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| files List<File> | List of files related to the variant data, , e.g.: images. |
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