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id String | The clinical analysis ID. |
uuid String | A universally unique identifier for the clinical analysis. |
description String | The clinical analysis description. |
type Type | The type of the clinical analysis: | SINGLE |
| | FAMILY |
| | CANCER |
| | COHORT |
| | AUTOCOMPARATIVE |
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disorder Disorder | Disorder. description String | Disorder description. | evidences List<Phenotype> | List of phenotypes related to the disorder. ageOfOnset String | Age at which the proband acquired a condition or symptoms of a that disorder. |
| status Status | | OBSERVED |
| | NOT_OBSERVED |
| | UNKNOWN |
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files Map<String, List<File>> | Map of files, where the key is the sample ID and the value is a list of files (VCF, BAM, BIGWIG)
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proband Individual | Proband. |
family Family | Family. |
roleToProband Map<String, familiarRelationship> | Familiar relationship: | MOTHER | Mother. | | FATHER | Father. | | STEP_MOTHER | Mother. | | STEP_FATHER | Father. | | IDENTICAL_TWIN | Twin. | | FRATERNAL_TWIN | Twin. | | FULL_SIBLING | Sibling. | | HALF_SIBLING | Sibling. | | STEP_SIBLING | Sibling. | | SISTER | Sister. | | BROTHER | Brother. | | STEP_SISTER | Sister. | | STEP_BROTHER | Brother. | | SON | Son. | | DAUGHTER | Daughter. | | CHILD_OF_UNKNOWN | Child. | | UNCLE | Uncle. | | AUNT | Aunt. | | MATERNAL_AUNT | Aunt. | | MATERNAL_UNCLE | Uncle. | | PATERNAL_AUNT | Aunt. | | PATERNAL_UNCLE | Uncle. | | NEPHEW | Nephew. | | NIECE | Niece. | | GRANDFATHER | Grandfather. | | GRANDMOTHER | Grandmother. | | MATERNAL_GRANDMOTHER | Grandmother. | | PATERNAL_GRANDMOTHER | Grandmother. | | MATERNAL_GRANDFATHER | Grandfather. | | PATERNAL_GRANDFATHER | Grandfather. | | GREAT_GRANDFATHER | Great-grandfather. | | GREAT_GRANDMOTHER | Great-grandmother. | | DOUBLE_FIRST_COUSIN | Cousin. | | COUSIN | Cousin. | | MALE_COUSIN | Cousin. | | FEMALE_COUSIN | Cousin. | | SECOND_COUSIN | Cousin. | | MALE_SECOND_COUSIN | Cousin. | | FEMALE_SECOND_COUSIN | Cousin. | | SPOUSE | Spouse. | | HUSBAND | Husband. | | OTHER | Other. | | UNKNOWN | Unknown. | | UNRELATED | Unrelated. | | PROBAND | Proband. |
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interpretations List<Interpretation> | List of interpretations. See the interpretation data model schema. |
consent ClinicalConsent | Consent. primaryFindings ConsentStatus | Consent for primary findings. | YES | Yes. | | NO | No. | | UNKNOWN | Unknown. |
| secondaryFindings ConsetStatus | Consent for secondary findings. | YES | Yes. | | NO | No. | | UNKNOWN | Unknown. |
| carrierFindings ConsentStatus | Consent for carrier findings. | YES | Yes. | | NO | No. | | UNKNOWN | Unknown. |
| researchFindings ConsentStatus | Consent for research findings. | YES | Yes. | | NO | No. | | UNKNOWN | Unknown. |
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analyst ClinicalAnalysisAnalyst | Information about the analyst. assignee String | Analyst. | assignedBy String | Person who assigned the analyst. | date String | Date. |
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priority Priority | Priority. |
flags List<String> | List of flags. |
creationDate String | Creation date. |
modificationDate String | Modification date. |
dueDate String | Due date. |
release int | Release. |
comments List<Comment> | List of comments. author String | Author. | type String | Type. | message String | Message. | date String | Date. |
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alerts List<Alert> | List of alerts. author String | Author. | date String | Date. | message String | Message. | risk Risk | Risk. |
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internal ClinicalAnalysisInternal | Internal information. status ClinicalAnalysisStatus | Clinical analysis internal status: name String | Name. | INCOMPLETE |
| | READY |
| | DELETED |
| | READY_FOR_VALIDATION |
| | READY_FOR_INTERPRETATION |
| | INTERPRETATION_IN_PROGRESS |
| | READY_FOR_INTERPRETATION_REVIEW |
| | INTERPRETATION_REVIEW_IN_PROGRESS |
| | READY_FOR_REPORT |
| | REPORT_IN_PROGRESS |
| | DONE |
| | REVIEW_IN_PROGRESS |
| | CLOSED |
| | REJECTED |
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| description String | Description. | date String | Date. |
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attributes Map<String, Object> | Map of attributes. |
status CustomStatus | Clinical analysis status set by the user: name String | Name. | description String | Description. | date String | Date. |
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