Variant Stats Data Model Schema

cohortId String	Cohort identifier
samplesCount int
filesCount int
alleleCount int	Total number of alleles in called genotypeCounters. Does not include missing alleles
refAlleleCount int	Number of reference alleles found in this variant
altAlleleCount int	Number of main alternate alleles found in this variants. Does not include secondary alternates
refAlleleFreq float	Reference allele frequency calculated from refAlleleCount and alleleCount, in the range (0,1)
altAlleleFreq float	Alternate allele frequency calculated from altAlleleCount and alleleCount, in the range (0,1)
missingAlleleCount int	Number of missing alleles
missingGenotypeCount int	Number of missing genotypeCounters
genotypeCount Map<String, int>	Count for each genotype found
genotypeFreq Map<String, float>	Genotype frequency for each genotype found
filterCount Map<String, int>	Number of samples with non-missing genotype with that specific filter
filterFreq Map<String, float>	Frequency of each filter. Count divided by the number of non-missing samples
qualityAvg float	The weighted average of the Quality, computed only for non-missing samples
qualityValuesCount int
maf float	Minor allele frequency
mgf float	Minor genotype frequency
mafAllele String	Allele with minor frequency
mgfGenotype String	Genotype with minor frequency