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Here you can find a detailed information about annotation schema:
id
String
Unique variant ID, this consists of chromosome, position, reference and alternate alleles in this format: chrom:pos:ref:alt
chromosome
The chromosome where the genomic variant is located
start
int
The 1-based position where the genomic variant starts. For variants coming from VCF files, this position is likely to be normalised
end
The 1-based position where the genomic variant ends. For variants coming from VCF files, this position is likely to be normalised
reference
Reference allele. For variants coming from VCF files, this position is likely to be normalised
alternate
Alternate allele. For variants coming from VCF files, this position is likely to be normalised
ancestralAllele
xrefs
List<Xref>
hgvs
List<String>
displayConsequenceType
consequenceTypes
List<ConsequenceType>
geneName
ensemblGeneId
ensemblTranscriptId
strand
biotype
exonOverlap
List<ExonOverlap>
number
percentage
float
transcriptAnnotationFlags
cdnaPosition
cdsPosition
codon
proteinVariantAnnotation
ProteinVariantAnnotation
uniprotAccession
uniprotName
position
uniprotVariantId
functionalDescription
substitutionScores
List<Score>
score
double
source
description
keywords
features
List<ProteinFeature>
type
sequenceOntologyTerms
List<SequenceOntologyTerm>
accession
name
populationFrequencies
List<PopulationFrequency>
study
population
refAllele
altAllele
refAlleleFreq
altAlleleFreq
refHomGenotypeFreq
hetGenotypeFreq
altHomGenotypeFreq
minorAllele
minorAlelleFreq
conservation
geneTraitAssociation
List<GeneTraitAssociation>
hpo
numberOfPubmeds
associationTypes
sources
geneDrugInteraction
List<GeneDrugInteraction>
drugName
studyType
traitAssociation
List<EvidenceEntry>
functionalScore
cytoband
List<Cytoband>
stain
repeat
List<Repeat>
period
consensusSize
copyNumber
percentageMatch
sequence
drugs
List<Drug>
therapeuticContext
pathway
effect
association
status
evidence
bibliography
additionalAttributes
Map<String, AdditionalAttribute>
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