Welcome to the CellBase documentation. You will find plenty of information in these pages regarding what CellBase project is, how to access public CellBase servers, implementation details, how to build and install clients/local servers and many other tutorials.
CellBase is open-source and freely available at https://github.com/opencb/cellbase
Recent space activity
Some important fixes made, please check
https://github.com/opencb/cellbase/releases/tag/v4.5.2
https://github.com/opencb/cellbase/releases/tag/v4.5.3
Web services updated and accessible at:
http://bioinfo.hpc.cam.ac.uk/cellbase/webservices
Some important fixes made, please check
https://github.com/opencb/cellbase/releases/tag/v4.5.1
Web services updated and accessible at:
http://bioinfo.hpc.cam.ac.uk/cellbase/webservices
New data sources, new web services and many variant annotation improvements (structural variants annotation, new population frequencies datasets and much more).
Accessible now at
http://bioinfo.hpc.cam.ac.uk/cellbase/webservices/
Please, have a look to the release notes document at
variation_chr*.full.json.gz GRCh37 files in our http download server have been updated to include gnomAD frequencies:
http://bioinfo.hpc.cam.ac.uk/downloads/cellbase/v4/homo_sapiens_grch37/variation/json/
An R CellBase client (CellBaseR) is now distributed by Bioconductor
https://bioconductor.org/packages/release/bioc/html/cellbaseR.html
gnomAD exomes and genomes population frequencies (GRCh37) are now provided as part of the variant annotation results:
http://bioinfo.hpc.cam.ac.uk/cellbase/webservices/rest/v4/hsapiens/genomic/variant/19:45411941:T:C/annotation
http://gnomad.broadinstitute.org/
Space contributors