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Index
Annotate
Custom annotation
Calculate Statistics
Define cohorts
Remove
Import
Query/ExportExport
Export statistics
Export statistics is an special case of export. Instead of export full variants, only the variant cohort statistics are exported.
As for variants export, there are multiple possible output formats:
- VCF : Standard VCF format without samples information, with the stats as values in the INFO column.
TSV (Tab Separated Values). Simple format with each cohort in one column.
Code Block language bash title TSV #CHR POS REF ALT ALL_AN ALL_AC ALL_AF ALL_HET ALL_HOM 22 16050213 C T 1000 1 0.001 0.002 0.0 22 16050607 G A 1000 2 0.002 0.004 0.0 22 16050740 A - 1000 1 0.001 0.002 0.0 22 16050840 C G 1000 13 0.013 0.026 0.0 22 16051075 G A 1000 2 0.002 0.004 0.0 22 16051249 T C 1000 91 0.091 0.162 0.01 22 16051453 A C 998 74 0.074 0.144 0.004 22 16051453 A G 926 2 0.002 0.144 0.004 22 16051723 A - 1000 12 0.012 0.024 0.0 22 16051816 T G 1000 2 0.002 0.004 0.0
- cellbase
- json
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