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IVA offers a high level of customisation...

There are four main categories:

General

OpenCGA Host and CellBase Host can be configured.

There is a section called projects in OpenCGA which allows to browse public projects without any login.  

Consequence Type, Population frequency and Protein Substitution Scores are enabled to have colors in web application. They can be modified to your needs.

Navigation Bar

For every menu, there is visibility option. It accepts three values - public, private and none. 

Public mode ensures that menu item is always visible in the application.

Private mode displays that item only when the user is successfully logged in.

None option is to hide that menu item. 

Welcome page

User who clones IVA are expected to have different config.js and welcome.html to have their own configured IVA.

CSS

All styles in IVA are from jso-styles.html. Please make sure that this file is present.