OpenCGA has published a "ready to run" docker image under "opencb/opencga-demo" repository for quick testing and playing without going through hassle to learn, wait and install each and every component of OpenCGA. Once user pull this image, he can immediately start running and using OpenCGA. This image contains the following components :
- OpenCGA binaries
- MongoDB 4.0
- Solr 6.6 ( default )
- init script ( install catalog and start populate populating data if user select)
Once user run opencga demo image, on first run, it will install catalog , load, annotate variant data from XXXXXX project and index into solr search engine and in mongoDB, start REST server (on port 9090) by default. In case user don't and start OpenCGA daemon. By default it won't load any data, In case user also wish to load some demo data, just pass load just pass skipLoad=false option option to instruct container to not load any data (user might be interested to load its own data instead of demo) . data. This will instruct OpenCGA Demo container to download data from Corpasome project, load, annotate, calculate stats and index into solr search engine (This process roughly takes 35-40 min depending on internet speed and machine spec).
| Code Block |
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| title | Run OpenCGA Demo (Default skipLoad True) |
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docker run --name demo -d opencb/opencga-demo:1.4.1 |
...
| Code Block |
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| title | Connect OpenCGA Demo Container |
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docker exec -it demo bash |
| Code Block |
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| title | Get Container Logs Tail |
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docker logs demo -f |
