OpenCGA has published a "ready to run" docker image under "opencb/opencga-demo" repository for quick testing and playing without going through hassle to learn, wait and install each and every component of OpenCGA. Once user pull this image, he can immediately start running and using OpenCGA. This image contains the following components :
- OpenCGA binaries
- MongoDB 4.0
- Solr 6.6 ( default )
- init script ( install catalog and start populating data if user select)
Once user run opencga demo image, on first run, it will install catalog in mongoDB, start REST server (on port 9090) and start OpenCGA daemon. By default it won't load any data, In case user also wish to load some demo data, just pass skipLoad=false option to instruct container to load data. This will instruct OpenCGA Demo container to download data from Corpasome project, load, annotate, calculate stats and index into solr search engine (This process roughly takes 35-40 min depending on internet speed and machine spec).
docker run --name demo -d opencb/opencga-demo:1.4.1
docker run --name demo -e skipLoad=false -d opencb/opencga-demo:1.4.1
OpenCGA will listen on the following address :
http://OpenCGA-Demo-Container-IP:9090/opencga/webservices/rest/v1/users/create
Solr Dashboard will be available on the following address:
http://OpenCGA-Demo-Container-IP:8983/solr
To connect with OpenCGA demo container :
docker exec -it demo bash
docker logs demo -f