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>>> from pycellbase.cbconfig import ConfigClient >>> from pycellbase.cbclient import CellBaseClient >>> cbc = CellBaseClient(cc) >>> result = variant_client.get_annotation("19:45411941:T:C,1:69585:TGAGGTCGATAGTTTTTA:-,14:38679764:-:GATCTGAGAAGNGGAANANAAGGG,19:33167329:AC:TT,22:16328960-16344095:<CN5>,22:16328960-16344095:<CN1>,22:16328960-16344095:<CNV>,22:16328960-16344095:<DEL>,22:16328960-16344095:<DUP>,22:16328960-16344095:<INV>") >>> len(result) 10 >>> result[8]["result"][0] {u'alternate': u'<DUP>', u'chromosome': u'22', u'consequenceTypes': [{u'biotype': u'unprocessed_pseudogene', u'ensemblGeneId': u'ENSG00000234381', u'ensemblTranscriptId': u'ENST00000435410', u'geneName': u'MED15P7', u'sequenceOntologyTerms': [{u'accession': u'SO:0001889', u'name': u'transcript_amplification'}], u'strand': u'+', u'transcriptAnnotationFlags': [u'basic']}, {u'biotype': u'unprocessed_pseudogene', u'ensemblGeneId': u'ENSG00000224435', u'ensemblTranscriptId': u'ENST00000426025', u'geneName': u'NF1P6', u'sequenceOntologyTerms': [{u'accession': u'SO:0001636', u'name': u'2KB_upstream_variant'}], u'strand': u'+', u'transcriptAnnotationFlags': [u'basic']}, {u'sequenceOntologyTerms': [{u'accession': u'SO:0001566', u'name': u'regulatory_region_variant'}]}], ... ... ... >>> result[8]["result"][0]["consequenceTypes"] [{u'biotype': u'unprocessed_pseudogene', u'ensemblGeneId': u'ENSG00000234381', u'ensemblTranscriptId': u'ENST00000435410', u'geneName': u'MED15P7', u'sequenceOntologyTerms': [{u'accession': u'SO:0001889', u'name': u'transcript_amplification'}], u'strand': u'+', u'transcriptAnnotationFlags': [u'basic']}, {u'biotype': u'unprocessed_pseudogene', u'ensemblGeneId': u'ENSG00000224435', u'ensemblTranscriptId': u'ENST00000426025', u'geneName': u'NF1P6', u'sequenceOntologyTerms': [{u'accession': u'SO:0001636', u'name': u'2KB_upstream_variant'}], u'strand': u'+', u'transcriptAnnotationFlags': [u'basic']}, {u'sequenceOntologyTerms': [{u'accession': u'SO:0001566', u'name': u'regulatory_region_variant'}]}] |
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