id String | The clinical analysis ID. |
uuid String | A universally unique identifier for the clinical analysis. |
description String | The clinical analysis description. |
type Type | The type of the clinical analysis: SINGLE |
| FAMILY |
| CANCER |
| COHORT |
| AUTOCOMPARATIVE |
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disorder Disorder | Disorder. Include Page |
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| Disorder Data Model Schema |
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| Disorder Data Model Schema |
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files Map<String, List<File>> Map of files, where the key is the sample ID and the value is a list of files (List<File> | List of files with all VCF, BAM, BIGWIG)... used in this analysis.
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proband Individual | Proband individual. |
family Family | Family info, only exist when analysis type is FAMILY. |
roleToProband Map<String, familiarRelationship> | Familiar relationship: MOTHER | Mother. | FATHER | Father. | STEP_MOTHER | Mother. | STEP_FATHER | Father. | IDENTICAL_TWIN | Twin. | FRATERNAL_TWIN | Twin. | FULL_SIBLING | Sibling. | HALF_SIBLING | Sibling. | STEP_SIBLING | Sibling. | SISTER | Sister. | BROTHER | Brother. | STEP_SISTER | Sister. | STEP_BROTHER | Brother. | SON | Son. | DAUGHTER | Daughter. | CHILD_OF_UNKNOWN | Child. | UNCLE | Uncle. | AUNT | Aunt. | MATERNAL_AUNT | Aunt. | MATERNAL_UNCLE | Uncle. | PATERNAL_AUNT | Aunt. | PATERNAL_UNCLE | Uncle. | NEPHEW | Nephew. | NIECE | Niece. | GRANDFATHER | Grandfather. | GRANDMOTHER | Grandmother. | MATERNAL_GRANDMOTHER | Grandmother. | PATERNAL_GRANDMOTHER | Grandmother. | MATERNAL_GRANDFATHER | Grandfather. | PATERNAL_GRANDFATHER | Grandfather. | GREAT_GRANDFATHER | Great-grandfather. | GREAT_GRANDMOTHER | Great-grandmother. | DOUBLE_FIRST_COUSIN | Cousin. | COUSIN | Cousin. | MALE_COUSIN | Cousin. | FEMALE_COUSIN | Cousin. | SECOND_COUSIN | Cousin. | MALE_SECOND_COUSIN | Cousin. | FEMALE_SECOND_COUSIN | Cousin. | SPOUSE | Spouse. | HUSBAND | Husband. | OTHER | Other. | UNKNOWN | Unknown. | UNRELATED | Unrelated. | PROBAND | Proband. |
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qualityControl ClinicalAnalysisQc | Quality control. Include Page |
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| Clinical Quality Control Data Model Schema |
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| Clinical Quality Control Data Model Schema |
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interpretation Interpretation | Primary interpretation. See the interpretation data model schema.
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secondaryInterpretations List<Interpretation> | List of secondary interpretations. See the interpretation data model schema. |
consent ClinicalConsent | Consent. primaryFindings ConsentStatus | Consent for primary findings. Include Page |
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| Clinical Consent Status Values |
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| Clinical Consent Status Values |
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| secondaryFindings ConsentStatus | Consent for secondary findings. Include Page |
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| Clinical Consent Status Values |
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| Clinical Consent Status Values |
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| carrierFindings ConsentStatus | Consent for carrier findings. Include Page |
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| Clinical Consent Status Values |
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| Clinical Consent Status Values |
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| researchFindings ConsentStatus | Consent for research findings. Include Page |
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| Clinical Consent Status Values |
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| Clinical Consent Status Values |
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analyst ClinicalAnalysisAnalyst | Information about the analyst. assigneeresponsible String | Analyst. | assignedBy String | Person A person who assigned the analyst. | date String | Date. |
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priority Priority | Priority.
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flags List<String> | List of flags. |
status CustomStatus | Clinical analysis status set by the user: name String | Name. | description String | Description. | date String | Date. |
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creationDate String | Creation date. |
modificationDate String | Modification date. |
dueDate String | Due date. |
release int | Release. |
comments List<Comment> | List of comments. Include Page |
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| Comment Data Model Schema |
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| Comment Data Model Schema |
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report ClinicalAnalysisReport | Clinical analysis report. |
alerts List<Alert> | List of alerts. author String | Author. | date String | Date. | message String | Message. | risk Risk | Risk.
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internal ClinicalAnalysisInternal | Internal information. status ClinicalAnalysisStatus | Clinical analysis internal status: name String | Name. INCOMPLETE |
| READY |
| DELETED |
| READY_FOR_VALIDATION |
| READY_FOR_INTERPRETATION |
| INTERPRETATION_IN_PROGRESS |
| READY_FOR_INTERPRETATION_REVIEW |
| INTERPRETATION_REVIEW_IN_PROGRESS |
| READY_FOR_REPORT |
| REPORT_IN_PROGRESS |
| DONE |
| REVIEW_IN_PROGRESS |
| CLOSED |
| REJECTED |
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| description String | Description. | date String | Date. |
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attributes Map<String, Object> | Map of attributes. |