var cellbase = {
    hosts: ["bioinfodev.hpc.cam.ac.uk/cellbase-4.5.0-beta"],
    version: "v4"
};

var opencga = {
    host: "bioinfodev.hpc.cam.ac.uk/opencga-1.0.0-rc3",
    version: "v1",
    projects: [
         {
             name: "Project A",
             alias: "proj_a",
             studies : [
                 {
                     name: "Study 1",
                     alias: "std_1"
                 }
             ]
         }
    ],
    cookies: {
        userName: "iva_userId",
        sessionId: "iva_sid"
    }
};

var consequenceTypes = {
    // This is the impact color. It allows to customise both the impact categories and desired colors
    color: {
        high: "red",
        moderate: "orange",
        low: "blue",
        modifier: "green"
    },
    /* 'Title' is optional. if there is no title provided then 'name' is going to be used.
     There are two more optional properties - 'checked' and 'color'. They can be set to display them default in web application.
     Similarly 'description' is optional as well.
     */
    categories: [
        {
            id: "",
            name: "",
            title: "Intergenic",
            description: "",
            terms: [
                {
                    id: "SO:0001631",
                    name: "upstream_gene_variant",
                    title: "upstream gene variant",
                    description: "A sequence variant located 5' of a gene",
                    impact: "modifier"
                },

				.		
				.
				.
			]
		},
		.	
		.
	]
};

var populationFrequencies = {
    color: {
        veryRare: "red",
        rare: "yellow",
        average: "orange",
        common: "blue"
    },
    studies: [
        {
            id: "1kG_phase3",
            title: "1000 Genomes",
            populations: [
                {
                    id: "ALL",
                    title: "All populations [ALL]",
                    active: true
                },
                {
                    id: "EUR",
                    title: "European [EUR]"
                },
				.	
				.
				.
			]
		},
		.	
		.
	]
};

var proteinSubstitutionScores = {
    // This is to show the predictions in respective colors
    sift: {
        deleterious: "red",
        tolerated: "green"
    },
    polyphen: {
        probablyDamaging: "red",
        possiblyDamaging: "orange",
        benign: "green",
        unknown: "black"
    }
};