Analysis
There are several native variant analysis implemented in OpenCGA, these use internal the different internal APIs developed to provide a scalable and high-performance implementation. Occasionally, these analysis can store results in the variant storage to allow users to filter by them, for instance GWAS analysis can be stored and/or indexed for filtering.
The analysis available include:
Knockout Analysis
PCA
Wrapper Analysis
You can use external tools using the wrapper analysis. Some tools are being implemented naively and available to all users.
Customisation
Users can easily extend and customise OpenCGA for their analysis.