Overview
Study oriented
Cohort definition
Study oriented
Cohort stats
VCF types
Aggregated VCFs
: Variant files with no sample specific values. Just aggregated data
Merged VCFs
: Variant files with a batch of samples with specific samples data.
gVCFs
: Single sample files with information for all the positions.
Use Cases
Single sample EXOMES files
Single sample GENOMES (gVCF) files
Multi-sample single file per chromosome - Lots of reference genotypes
Aggregated samples data - no genotypes
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