logLevel: "INFO" logFile: null ## number of seconds that session remains open sessionDuration: 1200 ## Default study when -s, --study are empty, e.g. "reference_grch37:1kG_phase3" defaultStudy: "" ## Alias to different studies, these can be fully qualified: user@project:study alias: 1kg_grch37: hgvauser@reference_grch37:1kG_phase3 1kg_grch38: reference_grch38:1kG_phase3 ## The default organism values can be defined here. organism: taxonomyCode: ${OPENCGA.CLIENT.ORGANISM.TAXONOMY_CODE} scientificName: ${OPENCGA.CLIENT.ORGANISM.SCIENTIFIC_NAME} commonName: ${OPENCGA.CLIENT.ORGANISM.COMMON_NAME} assembly: ${OPENCGA.CLIENT.ORGANISM.ASSEMBLY} ## REST client configuration options rest: host: "${OPENCGA.CLIENT.REST.HOST}" batchQuerySize: 200 timeout: ${OPENCGA.CLIENT.REST.TIMEOUT} defaultLimit: 2000 ## gRPC configuration options grpc: host: "${OPENCGA.CLIENT.GRPC.HOST}" ## Configure the default behaviour when query variants variant: unknownGenotype: "0/0" # each study can have a different format includeFormats: 1kg_grch37: "GT,AD,DP,GQ" |
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