This is the default client configuration file you would get if not maven properties have been set up during the building (see Configuration). Most of this settings apply to command line.
logLevel: "INFO" logFile: null ## number of seconds that session remains open sessionDuration: 1200 ## Default study when -s, --study are empty, e.g. "reference_grch37:1kG_phase3" defaultStudy: "" ## Alias to different studies, these can be fully qualified: user@project:study alias: 1kg_grch37: hgvauser@reference_grch37:1kG_phase3 1kg_grch38: reference_grch38:1kG_phase3 ## The default organism values can be defined here. organism: taxonomyCode: ${OPENCGA.CLIENT.ORGANISM.TAXONOMY_CODE} scientificName: ${OPENCGA.CLIENT.ORGANISM.SCIENTIFIC_NAME} commonName: ${OPENCGA.CLIENT.ORGANISM.COMMON_NAME} assembly: ${OPENCGA.CLIENT.ORGANISM.ASSEMBLY} ## REST client configuration options rest: host: "${OPENCGA.CLIENT.REST.HOST}" batchQuerySize: 200 timeout: ${OPENCGA.CLIENT.REST.TIMEOUT} defaultLimit: 2000 ## gRPC configuration options grpc: host: "${OPENCGA.CLIENT.GRPC.HOST}" ## Configure the default behaviour when query variants variant: unknownGenotype: "0/0" # each study can have a different format includeFormats: 1kg_grch37: "GT,AD,DP,GQ" |
Where:
Table of Contents: