This analysis builds a variant query setting STUDY, SAMPLE and ID (ID refers to a list of variant IDs gotten by using the actionable variant manager for the study's assembly). Once built the query, the secondary findings analysis executes the query and creates reported variants with its reported events. ACMG values are computed and a Tier3 is assigned to each reported event.

Implementation

OpenCGA > Secondary Findings > Secondary findings analysis.jpg

Input parameters

Sample ID
Study ID
Assembly

Output results

List of reported variants

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