BioNetDB implements the bionetdb.sh command line with the following syntaxis:
bionetdb.sh [-h|--help] [--version] <command> [options] |
In this section you will learn how to use the command lines, some examples are provided using bionetdb.sh command line.
BioNetDB follows the most standard conventions when implementing command lines, the most relevant ones are:
./opencga.sh [-h|--help] [--version] <command> [options]
You can execute the command line without any argument to get the usage help (you can also provide -h parameter):
Program: BioNetDB (OpenCB) Version: 1.0.0 Description: BioNetDB implements a storage engine to work with biological networks using Neo4j, a NoQSL Graph database Usage: bionetdb.sh [-h|--help] [--version] <command> [options] Commands: import Import the built data models in format CSV files into the database query Query and fetch data from BioNetDB database using this command line |
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