Page tree
Skip to end of metadata
Go to start of metadata

You are viewing an old version of this page. View the current version.

Compare with Current View Page History

« Previous Version 15 Next »

Welcome to the CellBase documentation. You will find plenty of information in these pages regarding what CellBase project is, how to access public CellBase servers, implementation details, how to build and install clients/local servers and many other tutorials


Recent space activity

CellBase 4.5.3 released
Some important fixes made, please check https://github.com/opencb/cellbase/releases/tag/v4.5.2 https://github.com/opencb/cellbase/releases/tag/v4.5.2 https://github.com/opencb/cellbase/releases/tag/v4.5.3 https://github.com/opencb/cellbase/releases/tag/v4.5.3 Web services updated and accessible at: http://bioinfo.hpc.cam.ac.uk/cellbase/webservices http://bioinfo.hpc.cam.ac.uk/cellbase/webservices
CellBase 4.5.1 released
Some important fixes made, please check https://github.com/opencb/cellbase/releases/tag/v4.5.1 https://github.com/opencb/cellbase/releases/tag/v4.5.1 Web services updated and accessible at: http://bioinfo.hpc.cam.ac.uk/cellbase/webservices http://bioinfo.hpc.cam.ac.uk/cellbase/webservices
CellBase v4.5.0 Released
New data sources, new web services and many variant annotation improvements (structural variants annotation, new population frequencies datasets and much more). Accessible now at http://bioinfo.hpc.cam.ac.uk/cellbase/webservices/ http://bioinfo.hpc.cam.ac.uk/cellbase/webservices/ Please, have a look to the release notes document at https://github.com/opencb/cellbase/releases/tag/v4.5.0 https://github.com/opencb/cellbase/releases/tag/v4.5.0
Updated variation downloads
variation_chr*.full.json.gz GRCh37 files in our http download server have been updated to include gnomAD frequencies: http://bioinfo.hpc.cam.ac.uk/downloads/cellbase/v4/homo_sapiens_grch37/variation/json/ http://bioinfo.hpc.cam.ac.uk/downloads/cellbase/v4/homo_sapiens_grch37/variation/json/
CellBaseR Bioconductor
An R CellBase client (CellBaseR) is now distributed by Bioconductor https://bioconductor.org/packages/release/bioc/html/cellbaseR.html https://bioconductor.org/packages/release/bioc/html/cellbaseR.html
gnomAD exomes and genomes population frequencies (GRCh37) are now provided as part of the variant annotation results: http://bioinfo.hpc.cam.ac.uk/cellbase/webservices/rest/v4/hsapiens/genomic/variant/19:45411941:T:C/annotation http://gnomad.broadinstitute.org/

Space contributors

{"mode":"list","scope":"descendants","limit":"5","showLastTime":"true","order":"update","contextEntityId":329209}

 

  • No labels