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Welcome to your new space!

Confluence spaces are great for sharing content and news with your team. This is your home page. Right now it shows recent space activity, but you can customize this page in anyway you like.

Main Features

  • Most important high-quality variant studies normalised and integrated in just one server database
  • Rich variant annotation performed
  • Population frequencies calculated
  • Interactive web-based data mining tool based on IVA

Contact


Latest news:

HGVA 1.1.0 released!
Javier Lopez posted on Jun 09, 2017
Improved web interface appearance Web interface includes new beta features: Beta Genome Browser available to visualise variant context Summary (beta) tab to get a quick, visual description of filtering result Facets to get graphical descriptions of the data Upgraded backend. HGVA backend is now powered by OpenCGA 1.1.1 Try now! http://hgva.opencb.org http://hgva.opencb.org
HGVA paper published!
Javier Lopez posted on May 30, 2017
HGVA paper has been recently published. Please, cite: Lopez, J., Coll, J., Haimel, M., Kandasamy, S., Tarraga, J., Furio-Tari, P., Rendon, A, Dopazo, J & Medina, I. (2017). HGVA: the Human Genome Variation Archive. Nucleic Acids Research. https://academic.oup.com/nar/article/3848351
gnomAD population frequencies
Javier Lopez posted on May 30, 2017
gnomAD genomes and gnomAD exomes population frequencies are now provided as part of the advanced annotation tab! http://gnomad.broadinstitute.org/


Variant Storage and Analysis


Clinical Genomics


Developers

Source Code

Web based on IVA project at  https://github.com/opencb/iva/tree/app/hgva

Server based on OpenCGA at  https://github.com/opencb/opencga

Contributing

IVA is a collaborative project that aims to integrate as many reference human studies as possible, you can contact us for feature request. If you want to contribute to the code you are more than welcome to contribute to IVA and OpenCGA


Contributors

Dr. Joaquin Dopazo (CIPF)

Dr. Stefan Gräf (Clinical School, University of Cambridge)

Ignacio Medina (HPCS, University of Cambridge)

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