- Created by Nacho Medina, last modified on Dec 28, 2016
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Welcome to HGVA space!
Welcome to the Human Genomic Variation Archive project. Here you will find plenty of information regarding what HGVA project is and how to use it. You can visit HGVA at
Features
Some of the main features include:
- Most important high-quality variant studies integrated
- Rich variant annotation performed
- Population frequencies calculated
- Interactive web-based data mining tool based on IVA
Contact
- Javier Lopez
- Ignacio Medina
Latest news:
- Improved web interface appearance
- Web interface includes new beta features:
- Beta Genome Browser available to visualise variant context
- Summary (beta) tab to get a quick, visual description of filtering result
- Facets to get graphical descriptions of the data
- Upgraded backend. HGVA backend is now powered by OpenCGA 1.1.1
Try now!
HGVA paper has been recently published. Please, cite: Lopez, J., Coll, J., Haimel, M., Kandasamy, S., Tarraga, J., Furio-Tari, P., Rendon, A, Dopazo, J & Medina, I. (2017). HGVA: the Human Genome Variation Archive. Nucleic Acids Research.
https://academic.oup.com/nar/article/3848351
gnomAD genomes and gnomAD exomes population frequencies are now provided as part of the advanced annotation tab!
http://gnomad.broadinstitute.org/
We are proud to announce HGVA project. HGVA aims to index most relevant human datasets to provide a unified high-performance NoSQL database. Variant dataset have been normalised and annotated using OpenCB CellBase. HGVA provides a complete RESTful API and client libraris and command line to access all data.
HGVA is developed and maintained by researchers at University of Cambridge and Genomics England.
We are proud to announce HGVA project!Current Datasets
1000G Phase3
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Recent space activity
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