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HGVA is powered by the Open Computational Genomic Analysis (OpenCGA) project. OpenCGA implements an exensive API that enables numerous operations over metadata, samples and genomic data. The whole API specification can be accessed at:

http://bioinfodev.hpc.cam.ac.uk/hgva-1.0/webservices

We will here focus on those end points of the API which are of more interest for HGVA users, giving examples of their use and pin pointing certain peculiarities of the parameters for HGVA.


Projects
http://bioinfodev.hpc.cam.ac.uk/hgva-1.0/webservices/rest/v1/projects/reference_grch37/info?sid=wHO5F2FMmm5xFs0cg89Q
http://bioinfodev.hpc.cam.ac.uk/hgva-1.0/webservices/rest/v1/projects/reference_grch37/studies?sid=wHO5F2FMmm5xFs0cg89Q


Studies
http://bioinfodev.hpc.cam.ac.uk/hgva-1.0/webservices/rest/v1/studies/search
http://bioinfodev.hpc.cam.ac.uk/hgva-1.0/webservices/rest/v1/studies/reference_grch37%3A1kG_phase3/summary
http://bioinfodev.hpc.cam.ac.uk/hgva-1.0/webservices/rest/v1/studies/reference_grch37%3A1kG_phase3/info?sid=wHO5F2FMmm5xFs0cg89Q
http://bioinfodev.hpc.cam.ac.uk/hgva-1.0/webservices/rest/v1/studies/reference_grch37%3A1kG_phase3/samples?sid=wHO5F2FMmm5xFs0cg89Q
http://bioinfodev.hpc.cam.ac.uk/hgva-1.0/webservices/rest/v1/studies/reference_grch37%3A1kG_phase3/variants?sid=wHO5F2FMmm5xFs0cg89Q&histogram=false&interval=2000&merge=false&limit=3

Samples
http://bioinfodev.hpc.cam.ac.uk/hgva-1.0/webservices/rest/v1/samples/search?sid=wHO5F2FMmm5xFs0cg89Q&study=reference_grch37%3A1kG_phase3&limit=3&lazy=true
http://bioinfodev.hpc.cam.ac.uk/hgva-1.0/webservices/rest/v1/samples/HG00096/info?sid=wHO5F2FMmm5xFs0cg89Q&study=reference_grch37%3A1kG_phase3&lazy=true

Cohorts
http://bioinfodev.hpc.cam.ac.uk/hgva-1.0/webservices/rest/v1/cohorts/GBR/samples?sid=wHO5F2FMmm5xFs0cg89Q&study=reference_grch37%3A1kG_phase3

Variants
http://bioinfodev.hpc.cam.ac.uk/hgva-1.0/webservices/rest/v1/analysis/variant/query?sid=wHO5F2FMmm5xFs0cg89Q&studies=hgvauser%40reference_grch37%3A1kG_phase3&histogram=false&interval=2000&merge=false&limit=3

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