Metadata and Security
Metadata Database
Authenticated Environment
Variant and Alignment Storage
Variant Database
OpenCGA implements a high-performance and scalable variant NoSQL database to store and index thousands of whole genome VCF files. Current
Many variant operations have been implemented such as variant aggregation, stats calculation, variant annotation, export, ...
Alignment Storage
Easy to Use
REST API and Clients
Command Line Interface
Clinical Analysis
Clinical Data
You can store all you clinical data in our free data model solution in Catalog. You can define your clinical variables and annotate files, samples, individuals, families or cohort.
Clinical Data is indexed automatically to provide a real-time queries and aggregations analysis.
Clinical Interpretation
We have implemented some automatic clinical interpretation algorithms for Rare Diseases
Big Data Analysis
Rich Data Models
Spark Analysis
Visualisation
Source Code
Web based on IVA project at https://github.com/opencb/iva/tree/app/hgva
Server based on OpenCGA at https://github.com/opencb/opencga
Contributing
IVA is a collaborative project that aims to integrate as many reference human studies as possible, you can contact us for feature request. If you want to contribute to the code you are more than welcome to contribute to IVA and OpenCGA
Contributors
Ignacio Medina (HPCS, University of Cambridge)
Dr. Augusto Rendon (Genomics England)
Recent space activity