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OpenCGA is still under a very active development, we are heading to the first stable release in 2017 Q2, you can find more detailed information in GitHub Releases at https://github.com/opencb/opencga/releases.
1.0.0 (Not released yet)
Catalog
- [FIX] Authenticated users can now see public data (#501)
- Permissions to individuals are directly propagated to samples (#509)
- [CHANGED] Some create and update permissions have been merged into write (#506)
- [CHANGED] Permissions given to folders are now physically propagated (#505).
- [CHANGED] Changes in session data model (#479)
Storage
Server
- Remove create-folder from REST, use just create nowAdded new files/create [POST] webservice to create folders and files with some content (#514)
- Renamed parameters from acl/update (2617993)
1.0.0-rc3 (January 2017)
General
- Major changes in maven properties and configuration files. (#480)
- catalog-configuration.yml and configuration.yml have been merged. (#476)
Catalog
- Added support to fetch shared projects and studies.
- Added organism information to the project data model. (#455)
- Renamed diskUsage and diskQuota for size and quota respectively in all data models were present.
- Closed sessions are now removed from the array of sessions (but they can still be found in the audit collection). (#475)
Storage
- Improve error handling for storage operations (#447, #463, #465)
- Add param --resume to opencga-analysis.sh and opencga-storage.sh command line (#465)
- Import and export variants datasets (#459, #460)
- Enable gRPC as top level feature (#492)
- New top layer StorageManager connecting catalog with storage (#486)
- Shade proto and guava dependencies for Hadoop (#440)
Server
- Create and update webservices have been all implemented via POST.
Known issues
OpenCGA storage hadoop is not available in this version. To compile use this line:
mvn clean install -DskipTests -pl '!:opencga-storage-hadoop-core'
1.0.0-rc2 (
NovemeberNovember 2016)
1.0.0-rc1 (September 2016)
This release constitutes the first release candidate (RC1). This is the biggest release ever with more than 1,400 commits, special mention to j-coll and pfurio for their contribution in Catalog, Storage and Server components.
General
- New command line interfaces (CLI) for users (opencga.sh), admins (opencga-admin.sh) and analysis (opencga-analysis.sh)
Catalog
- New catalog configuration file using YAML.
- New authorisation method. A big list of permission have been defined.
- New smart id resolver. Numerical ids are no longer mandatory and ids are now resolved internally given the alias.
- New and improved java and python command lines.
- New javascript, java and R client implementations.
- Support for annotations in cohorts.
Storage
- Many performance improvements and fixes in MongoBD storage engine, the most notable include a new load strategy to improve file merging scalability
- New storage engine based on Apache HBase, this is completely functional but is tagged as beta until more tests are done.
- New custom variant annotation implemented
Server
- An experimental gRPC server implemented
v0.7.0
Third Beta
v0.6.0
Second Beta
v0.5.0
First Beta
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