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Overview
OpenCGA Variant Storage Engine provides a centralized solution to storage Genomic Variants. It provides a source of data for analysis and visualization in compatible viewers like GenomeMaps. Allowing a fast reading and filtering for variants will speed up analysis, with fastest and more accurate results.
There are an increasing number of biological formats supported by OpenCGA related with a common NGS pipeline. Within this formats, we focus on Genomic Variants due to the complexity and analysis capabilities.
Study oriented
Cohort stats
VCF types
- Aggregated VCFs: Variant files with no sample specific values. Just aggregated data
- Merged VCFs: Variant files with a batch of samples with specific samples data.
- gVCFs: Single sample files with information for all the positions.
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