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<profile> <id>localhost</id> <activation> <activeByDefault>true</activeByDefault> </activation> <properties> <CELLBASE.DB.MONGODB.HOST>localhost:9999</CELLBASE.DB.MONGODB.HOST> <CELLBASE.DB.USER></CELLBASE.DB.USER> <CELLBASE.DB.PASSWORD></CELLBASE.DB.PASSWORD> <CELLBASE.FILES.PATH>/home/imedina/data/cellbase/files</CELLBASE.FILES.PATH> <CELLBASE.DB.NEO4J.HOST>localhost:27017</CELLBASE.DB.NEO4J.HOST> <!-- <CELLBASE.DB.MONGODB.AUTHENTICATIONDATABASE>admin</CELLBASE.DB.MONGODB.AUTHENTICATIONDATABASE> <CELLBASE.DB.MONGODB.READPREFERENCE>primary</CELLBASE.DB.MONGODB.READPREFERENCE> <CELLBASE.DB.MONGODB.READPREFERENCE>secondaryPreferred</CELLBASE.DB.MONGODB.READPREFERENCE> <CELLBASE.DB.MONGODB.REPLICASET></CELLBASE.DB.MONGODB.REPLICASET> --> <CELLBASE.REST.URL>http://bioinfodev.hpc.cam.ac.uk/cellbase/webservices/rest</CELLBASE.REST.URL> <CELLBASE.VERSION>v4</CELLBASE.VERSION> <CELLBASE.ENSEMBL.LIBS>/home/imedina/apis/ensembl/api_79</CELLBASE.ENSEMBL.LIBS> <OPENCGA.CATALOG.DB.HOSTS>localhost:27017</OPENCGA.CATALOG.DB.HOSTS> <OPENCGA.CATALOG.DB.PORT>27017</OPENCGA.CATALOG.DB.PORT> <OPENCGA.CATALOG.DB.DATABASE>opencga_catalog</OPENCGA.CATALOG.DB.DATABASE> <OPENCGA.CATALOG.DB.USER></OPENCGA.CATALOG.DB.USER> <OPENCGA.CATALOG.DB.PASSWORD></OPENCGA.CATALOG.DB.PASSWORD> <OPENCGA.CATALOG.DB.AUTHENTICATION_DATABASE></OPENCGA.CATALOG.DB.AUTHENTICATION_DATABASE> <OPENCGA.STORAGE.STUDY.METADATA.MANAGER></OPENCGA.STORAGE.STUDY.METADATA.MANAGER> <OPENCGA.CLIENT.HOST>http://bioinfodev.hpc.cam.ac.uk/opencga-1.0.0-rc3</OPENCGA.CLIENT.HOST> <OPENCGA.CATALOG.DB.TEST.DATABASE>catalogTest</OPENCGA.CATALOG.DB.TEST.DATABASE> <OPENCGA.CATALOG.TEST.ROOTDIR>file:/opt/opencga/catalogTest/</OPENCGA.CATALOG.TEST.ROOTDIR> <OPENCGA.CELLBASE.HOST>http://bioinfodev.hpc.cam.ac.uk/cellbase/webservices/rest/</OPENCGA.CELLBASE.HOST> <OPENCGA.CELLBASE.VERSION>latest</OPENCGA.CELLBASE.VERSION> <OPENCGA.STORAGE.VARIANT.DB.HOST>localhost:27017</OPENCGA.STORAGE.VARIANT.DB.HOST> <OPENCGA.STORAGE.VARIANT.DB.USER></OPENCGA.STORAGE.VARIANT.DB.USER> <OPENCGA.STORAGE.VARIANT.DB.PASSWORD></OPENCGA.STORAGE.VARIANT.DB.PASSWORD> <OPENCGA.STORAGE.VARIANT.DB.AUTHENTICATION_DATABASE></OPENCGA.STORAGE.VARIANT.DB.AUTHENTICATION_DATABASE> <OPENCGA.ANALYSIS.EXECUTION.MANAGER>LOCAL</OPENCGA.ANALYSIS.EXECUTION.MANAGER> <OPENCGA.CATALOG.ROOTDIR>/opt/opencga/sessions/</OPENCGA.CATALOG.ROOTDIR> <OPENCGA.INSTALLATION.DIR>/opt/opencga</OPENCGA.INSTALLATION.DIR> </properties> </profile> |
After creating and configuring the default profile, you can build OpenCGA by executing the following command from the root of the cloned repository:
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