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Code Block
languagexml
    <profile>
     <id>localhost</id>
     <activation>
       <activeByDefault>true</activeByDefault>
     </activation>
     <properties>
       <CELLBASE.DB.MONGODB.HOST>localhost:9999</CELLBASE.DB.MONGODB.HOST>
       <CELLBASE.DB.USER></CELLBASE.DB.USER>
       <CELLBASE.DB.PASSWORD></CELLBASE.DB.PASSWORD>
       <CELLBASE.FILES.PATH>/home/imedina/data/cellbase/files</CELLBASE.FILES.PATH>
        <CELLBASE.DB.NEO4J.HOST>localhost:27017</CELLBASE.DB.NEO4J.HOST>

        <!--
       <CELLBASE.DB.MONGODB.AUTHENTICATIONDATABASE>admin</CELLBASE.DB.MONGODB.AUTHENTICATIONDATABASE>
       <CELLBASE.DB.MONGODB.READPREFERENCE>primary</CELLBASE.DB.MONGODB.READPREFERENCE>
        <CELLBASE.DB.MONGODB.READPREFERENCE>secondaryPreferred</CELLBASE.DB.MONGODB.READPREFERENCE>
        <CELLBASE.DB.MONGODB.REPLICASET></CELLBASE.DB.MONGODB.REPLICASET>
   
    -->        <CELLBASE.REST.URL>http://bioinfodev.hpc.cam.ac.uk/cellbase/webservices/rest</CELLBASE.REST.URL>
       <CELLBASE.VERSION>v4</CELLBASE.VERSION>
       <CELLBASE.ENSEMBL.LIBS>/home/imedina/apis/ensembl/api_79</CELLBASE.ENSEMBL.LIBS>

       <OPENCGA.CATALOG.DB.HOSTS>localhost:27017</OPENCGA.CATALOG.DB.HOSTS>
       <OPENCGA.CATALOG.DB.PORT>27017</OPENCGA.CATALOG.DB.PORT>
       <OPENCGA.CATALOG.DB.DATABASE>opencga_catalog</OPENCGA.CATALOG.DB.DATABASE>
       <OPENCGA.CATALOG.DB.USER></OPENCGA.CATALOG.DB.USER>
       <OPENCGA.CATALOG.DB.PASSWORD></OPENCGA.CATALOG.DB.PASSWORD>
       <OPENCGA.CATALOG.DB.AUTHENTICATION_DATABASE></OPENCGA.CATALOG.DB.AUTHENTICATION_DATABASE>

        <OPENCGA.STORAGE.STUDY.METADATA.MANAGER></OPENCGA.STORAGE.STUDY.METADATA.MANAGER>

        <OPENCGA.CLIENT.HOST>http://bioinfodev.hpc.cam.ac.uk/opencga-1.0.0-rc3</OPENCGA.CLIENT.HOST>

        <OPENCGA.CATALOG.DB.TEST.DATABASE>catalogTest</OPENCGA.CATALOG.DB.TEST.DATABASE>
        <OPENCGA.CATALOG.TEST.ROOTDIR>file:/opt/opencga/catalogTest/</OPENCGA.CATALOG.TEST.ROOTDIR>

        <OPENCGA.CELLBASE.HOST>http://bioinfodev.hpc.cam.ac.uk/cellbase/webservices/rest/</OPENCGA.CELLBASE.HOST>
        <OPENCGA.CELLBASE.VERSION>latest</OPENCGA.CELLBASE.VERSION>

        <OPENCGA.STORAGE.VARIANT.DB.HOST>localhost:27017</OPENCGA.STORAGE.VARIANT.DB.HOST>
        <OPENCGA.STORAGE.VARIANT.DB.USER></OPENCGA.STORAGE.VARIANT.DB.USER>
        <OPENCGA.STORAGE.VARIANT.DB.PASSWORD></OPENCGA.STORAGE.VARIANT.DB.PASSWORD>
        <OPENCGA.STORAGE.VARIANT.DB.AUTHENTICATION_DATABASE></OPENCGA.STORAGE.VARIANT.DB.AUTHENTICATION_DATABASE>

        <OPENCGA.ANALYSIS.EXECUTION.MANAGER>LOCAL</OPENCGA.ANALYSIS.EXECUTION.MANAGER>

       <OPENCGA.CATALOG.ROOTDIR>/opt/opencga/sessions/</OPENCGA.CATALOG.ROOTDIR>

       <OPENCGA.INSTALLATION.DIR>/opt/opencga</OPENCGA.INSTALLATION.DIR>
     </properties>
   </profile>


After creating and configuring the default profile, you can build OpenCGA by executing the following command from the root of the cloned repository:

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