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titleClone Dependency
git clone github-Dependecny-URL


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titleCompile Dependency Compile
mvn clean install -DskipTests

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$ git clone https://github.com/opencb/opencga.git
Cloning into 'opencga'...
remote:
Counting objects: 20267, done.
remote: Compressing objects: 100% (219/219), done.
remote: Total 20267 (delta 105), reused 229 (delta 35)
Receiving objects: 100% (20267/20267), 7.23 MiB | 944.00 KiB/s, done.
Resolving deltas: 100% (6363/6363), done.

Latest stable release at master branch can be downloaded executing:

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$ git clone -b master https://github.com/opencb/opencga.git
Cloning into 'opencga'...
remote: Counting objects: 20267, done.
remote: Compressing objects: 100% (219/219), done.
remote: Total 20267 (delta 105), reused 229 (delta 35)
Receiving objects: 100% (20267/20267), 7.23 MiB | 812.00 KiB/s, done.
Resolving deltas: 100% (6363/6363), done.

Build

OpenCGA can be compiled directly, just by executing mvn install -DskipTests, but some configuration files can be customized with the content of the file ~/.m2/settings.xml.

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After successful compilation, user should find the following file structure under OPENCGA.INSTALLATION.DIR:

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opencga/
├── tools/
├── bin/
├── conf/
└── libs/

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