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This page describes how to setup an instance of CellBase, and populate
Warning |
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You do not need to install CellBase to run queries. See Using CellBase for information how to run queries. |
Step 1 - Configuring the Server
Hardware
Which sort of hardware you need depends on how much data you need, query load, etc. A full CellBase instance is 1 TB of data, but loading only genomic data is XXX GB. Also loading and querying data is very resource intensive, we recommend at least XXX GB of RAM.
Software Dependencies
Below are the software dependencies required by CellBase.
Software | Version | Purpose |
---|---|---|
Java | 8 | |
MongoDB | 3.6 | Database |
Tomcat | 8.5x | |
Docker | 18 | Building Ensembl |
- Java - we recommend you use the OpenJDK.
- MongoDB - put your mongo credentials in settings.xml ???
- Tomcat - put your tomcat credentials in settings.xml ???
- Docker - CellBase uses docker to house the Perl modules required to query Ensembl's Perl API.
Step 2 - Downloading the data
Step 3 - Building the data
Step 4 - Loading the data
Now that you have your own installation of CellBase, see Using CellBase for information how to run queries.
Table of Contents:
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