OpenCGA has published a "ready to run" docker image under "the repository opencb/opencga-demo" repository for for quick testing and playing without going through hassle to learn, wait and install each and every component of OpenCGA. Once user users pull this image, he they can immediately start running run and using use OpenCGA. This image contains the following components :
- OpenCGA binaries
- MongoDB 4.0
- Solr 6.6 (default)
- init script ( install catalog and start populating data if user select.sh, a bash script to install OpenCGA catalog and populate data (optional)
Once user users run opencga demo image, on first run, it will install catalog in mongoDB, start REST server (on port 9090) and start OpenCGA daemon. By default, it won't load any data, In case user users also wish to load some demo data, just pass skipLoad=false option to instruct set the option skipLoad to false instruct container to load data. This will instruct OpenCGA Demo container to download data from Corpasome project Corpasome project, load, annotate, calculate stats and index into solr Solr search engine (. This process roughly takes 35-40 min depending on internet speed and machine spec)specifications.
Following are few of useful docker commands, URLs and addresses to interact with OpenCGA demo container :
...