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| Code Block | ||
|---|---|---|
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/opt/opencga/bin/opencga-analysis.sh variant index --outdir /opt/opencga/sessions/jobs/J_2510 -DcalculateStats=true --annotate --file variantFile.vcf.gz --path tmp: .... |
On startup, docker container will mount the locations listed in "dockerArgs" parameter in "configuration.yml" file, e.g; "/opt/opencga/conf", "/opt/opencga/sessions", "storage location" (where variant files are stored) and any other run time options. This docker container will have access to shared configuration, session and storage location and will start indexing the variant file into storage (HBase|MongoDB).
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