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Once daemon is running, it will fetch available jobs from the catalog, prepare them and then submit each catalog job as an "Azure Task" to the batch pool specified in "configuration.yml". A typical Azure task command will look like :
| Code Block | ||
|---|---|---|
| ||
/opt/opencga/bin/opencga-analysis.sh variant index --outdir /opt/opencga/sessions/jobs/J_2510 -DcalculateStats=true --annotate --file variantFile.vcf.gz --path tmp: ... |
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