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changes.mady.by.user Joaquín Tárraga Giménez

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changes.mady.by.user Nacho Medina

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GREEN

quality

Enum

List<File>

List of files related to the variant data, , e.g.: images.

result?

Enum

Red, yellow and green

REDYELLOW

Quality control result.

HIGHQC passed.
MEDIUMUncertainty.
LOWQC failed.
UNKNOWNQC not assessed.


variant

VariantQc

Quality control on variant data.

stats

List<SampleVariantStats>

Sample variant stats.  See sample variant stats data model.

files

List<File>

List of files related to this sampleId the variant data, e.g.: images.



alignment

AlignmentQc

Quality control on variant data.

stats

List<AlignmentStats>

Alignment stats  for each alignment file (BAM).

stats

List<AlignmentStats>

Alignment stats .  See alignment stats.

coverageStats

LIst<CoverageStats>

Coverage stats  See alignment stats data model schema.

files

List<File>

List of files related to the variant data, , e.g.: images.

geneCoverageStats

LIst<GeneCoverageStats>


Gene coverage stats for each alignment file (BAM).

Include Page
Gene Coverage Stats Data Model Schema
Gene Coverage Stats Data Model Schema
files


analyst

Analyst

Analyst carrying out the QC.

name

String

Name.

email

String

E-mail.

company

String

Company.


date

Date

Modification date.

comments

List<Comment>

Comments.

Include Page
Comment Data Model Schema
Comment Data Model Schema