- This line was added.
- This line was removed.
- Formatting was changed.
Variant Stats contain a basic information for each variant in a different cohort.
Variant Stats is implemented using Hadoop MapReduce over HBase.
OpenCGA support different input parameters:
- Variant Query
- Sample list, cohort or query
Variant stat file including the following values:
If the stats are not indexed, the analysis produces a Variant stats file with the following model schema:
Pre-computed stats are useful for filtering variants. This stats are intra-study, calculated within a given cohort.
Table of Contents:
|Table of Contents|