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languagejs
firstline1
titleVariant model example
linenumberstrue
collapsetrue
{
    "id": "1:69511:A:G",
    "names": ["rs75062661"],
    "chromosome": "1",
    "start": 69511,
    "end": 69511,
    "strand": "+",
    "length": 1,
    "type": "SNV",
    "reference": "A",
    "alternate": "G",
    "studies": [
        {
            "studyId": "demo@family:corpasome",
			"secondaryAlternates": [],
            "files": [
                {
                    "fileId": "quartet.variants.annotated.vcf.gz"
                    "call" : {
                    
                    },
                    "data": {
                        "ABHom": "0.982",
                        "AC": "8",
                        "AF": "1.00",
                        "AN": "8",
                        "BaseQRankSum": "2.089",
                        "DB": "true",
                        "DP": "331",
                        "Dels": "0.00",
                        "EFF": "NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Aca/Gca|T141A|305|OR4F5||CODING|NM_001005484.1|1|1)",
                        "FILTER": "VQSRTrancheSNP99.90to100.00",
                        "FS": "8.817",
                        "HaplotypeScore": "2.4399",
                        "MLEAC": "8",
                        "MLEAF": "1.00",
                        "MQ": "15.47",
                        "MQ0": "145",
                        "MQRankSum": "-0.047",
                        "OND": "0.018",
                        "QD": "12.97",
                        "QUAL": "4293.01",
                        "ReadPosRankSum": "1.662",
                        "SB": "-1.450e+03",
                        "VCF_ID": "rs75062661",
                        "VQSLOD": "-14.4975",
                        "culprit": "MQ",
                        "set": "FilteredInAll"
                    }
                }
            ],
            "secondaryAlternates": [],
            "sampleDataKeys": ["GT", "AD", "DP", "GQ", "PL"],
            "samples": [
                {
                    "sampleId": "",
                    "fileIndex": 0,
                    "data": ["1/1", "2,171", "173", "99", "2218,228,0"]
                },
                {
                    "sampleId": "",
                    "fileIndex": 0,
                    "data": ["1/1", "0,33", "34", "60", "508,60,0"]
                },
                {
                    "sampleId": "",
                    "fileIndex": 0,
                    "data": ["1/1", "0,61", "63", "93", "777,93,0"]
                },
                {
                    "sampleId": "",
                    "fileIndex": 0,
                    "data": ["1/1", "0,61", "61", "96", "790,96,0"]
				}
            ],
            "issuesstats": [],
				{
					"cohortId": "ALL",
					"alleleCount":         "scores8,
					"altAlleleCount": [],
            "stats": {"ALL8,
					"altAlleleFreq": 1.0,
					"filterCount": {"alleleCount
						"PASS": 80,
						"VQSRTrancheSNP99.90to100.00": 1
                                           "altAlleleCount": 8,
                                             "altAlleleFreq": 1.0,
                                             "filterCount": {"PASS": 0,
                                                             "VQSRTrancheSNP99.90to100.00": 1},
                                             "filterFreq": {"PASS": 0.0,
                                                            "VQSRTrancheSNP99.90to100.00": 1.0},
                                             "genotypeCount": {"0/0": 0,
                                                               "0/1": 0,
                                                               "1/1": 4},
                                             "genotypeFreq": {"0/0": 0.0,
                                                              "0/1": 0.0,
                                                              "1/1": 1.0},
                                             "maf": 0.0,
                                             "mafAllele": "A",
                                             "mgf": 0.0,
                                             "mgfGenotype": "0/0",
                                             "missingAlleleCount": 0,
                                             "missingGenotypeCount": 0,
                                             "qualityAvg": 4293.01,
                                             "refAlleleCount": 0,
                                             "refAlleleFreq": 0.0}
                                             },
                           }],

              "annotation": {
                "additionalAttributes": {
                    "opencga": {
                        "attribute": {
                            "annotationId": "CURRENT",
                            "release": "1"
                        }
                    }
                },
                "alternate": "G",
                "chromosome": "1",
                "consequenceTypes": [
                    {
                        "biotype": "protein_coding",
                        "cdnaPosition": 421,
                        "cdsPosition": 421,
                        "codon": "Aca/Gca",
                        "ensemblGeneId": "ENSG00000186092",
                        "ensemblTranscriptId": "ENST00000335137",
                                                   "exonOverlap": [{"number": "1/1",
                                                                    "percentage": 0.108932465}],
                                                   "geneName": "OR4F5",
                                                   "proteinVariantAnnotation": {"alternate": "ALA",
                                                                                "features": [{"description": "GPCR, "
                                                                                                             "rhodopsin-like, "
                                                                                                             "7TM",
                                                                                              "end": 280,
                                                                                              "id": "IPR017452",
                                                                                              "start": 34},
                                                                                             {"end": 182,
                            					},
					"filterFreq": {
						"PASS": 0.0,
						"VQSRTrancheSNP99.90to100.00": 1.0
					},
					"genotypeCount": {
						"0/0": 0,
						"0/1": 0,
						"1/1": 4
					},
					"genotypeFreq": {
						"0/0": 0.0,
						"0/1": 0.0,
						"1/1": 1.0
					},
					"maf": 0.0,
					"mafAllele": "A",
					"mgf": 0.0,
					"mgfGenotype": "0/0",
					"missingAlleleCount": 0,
					"missingGenotypeCount": 0,
					"qualityAvg": 4293.01,
					"refAlleleCount": 0,
					"refAlleleFreq": 0.0
				}
			],
            "scores": [],
			"issues": []
		}
	],
	"annotation": {
		"id": "rs2691305",
		"chromosome": "1",
		"start": 69511,
		"reference": "A",
		"alternate": "G",
		"hgvs": ["ENST00000335137(ENSG00000186092):c.421A>G"],                     
		"displayConsequenceType": "missense_variant",
		"consequenceTypes": [
        "start": 90			{
				"geneName": "OR4F5",
				"ensemblGeneId": "ENSG00000186092",
                "ensemblTranscriptId": "ENST00000335137",
				"biotype": "protein_coding",
                "cdnaPosition": 421,
                "cdsPosition": 421,
                "codon": "Aca/Gca",
				"exonOverlap": [
					{
						"number": "1/1",
						"percentage": 0.108932465
					}
				],
				"proteinVariantAnnotation": {
					"alternate": "ALA",
					"features": [{"description": "GPCR, "
   "type": "disulfide "                                                                                                          "bond"}rhodopsin-like, "
                                                                                            {"description": "Helical; "               "7TM",
                                                                                              "Name=4"end": 280,
                                                                                              "endid": 151"IPR017452",
                                                                                              "start": 13334},
                                                                                              {"typeend": "transmembrane "
   182,
                                                                                                  "regionstart"}: 90,
                                                                                             { "descriptiontype": "Olfactorydisulfide "
                                                                                                             "receptor ""bond"},
                                                                                             {"description": "Helical; "
              "4F5",                                                                                               "end": 305Name=4",
                                                                                              "idend": "PRO_0000150547"151,
                                                                                              "start": 1133,
                                                                                              "type": "chain"}],transmembrane "
                                                                                                      "region"},
               "keywords": ["Cell "                                                                            {"description": "Olfactory "
               "membrane",                                                                                              "Completereceptor "
                                                                                                     "proteome",        "4F5",
                                                                                      "Disulfide "       "end": 305,
                                                                                     "bond",         "id": "PRO_0000150547",
                                                                                   "G-protein "          "start": 1,
                                                                                  "coupled "           "type": "chain"}],
                                                                                "keywords": ["receptorCell ",
                                                                                             "Membranemembrane",
                                                                                             "OlfactionComplete ",
                                                                                             "Receptorproteome",
                                                                                             "ReferenceDisulfide "
                                                                                             "proteomebond",
                                                                                             "SensoryG-protein "
                                                                                             "transductioncoupled ",
                                                                                             "Transducerreceptor",
                                                                                             "TransmembraneMembrane",
                                                                                             "Transmembrane Olfaction",
                                                                                             "helix"],Receptor",
                                                                                             "Reference "
          "position": 141,                                                                                 "reference": "THRproteome",
                                                                                "substitutionScores": [{"description": "tolerated",             "Sensory "
                                                                                             "score": 0.63,transduction",
                                                                                             "Transducer",
                   "source": "sift"},                                                                         "Transmembrane",
                              {"description": "benign",                                                              "Transmembrane "
                                         "score": 0.003,                                                   "helix"],
                                                     "source": "polyphen"}],                          "position": 141,
                                                     "uniprotAccession": "Q8NH21"},                          "reference": "THR",
                        "sequenceOntologyTerms": [{"accession": "SO:0001583",                                                      "substitutionScores": [{"description": "tolerated",
                      "name": "missense_variant"}],                                                    "strand": "+",                            "score": 0.63,
                      "transcriptAnnotationFlags": ["CCDS",                                                                                 "source": "basicsift"]},
                                                  {"sequenceOntologyTerms": [{"accession": "SO:0001566",                                                   {"description": "benign",
                          "name": "regulatory_region_variant"}]}],                              "conservation": [{"score": 1.149999976158142,                                                "sourcescore": "gerp"},0.003,
                                                    {"score": 0.1289999932050705,                                                    "source": "phastConspolyphen"}],
                                                   {"score": -0.527999997138977,                             "uniprotAccession": "Q8NH21"},
                   "source": "phylop"}],                                "cytobandsequenceOntologyTerms": [{"chromosomeaccession": "1SO:0001583",
         
                                 "end": 2300000,                                            "name": "p36.33"missense_variant"}],
                                           "stain": "gneg",       "strand": "+",
                                   "start": 1}],                              "displayConsequenceTypetranscriptAnnotationFlags": ["missense_variantCCDS",
                             "functionalScore": [{"score": -0.7899999618530273,                                                   "source": "cadd_rawbasic"]},
                                                  {"score"sequenceOntologyTerms": [{"accession": 0.03999999910593033"SO:0001566",
                                                  "source": "cadd_scaled"}],
                             "geneDrugInteractionname": ["regulatory_region_variant"}]}],
                             "geneTraitAssociationconservation": []{"score": 1.149999976158142,
                             "hgvs": ["ENST00000335137(ENSG00000186092):c.421A>G"],                  "source": "gerp"},
             "id": "rs2691305",                                "populationFrequencies": [{"altAllelescore": "G"0.1289999932050705,
                                               "source": "phastCons"},
       "altAlleleFreq": 0.95061594,                                       {"score": -0.527999997138977,
                     "altHomGenotypeFreq": 0.93263996,                         "source": "phylop"}],
                             "cytoband": [{"hetGenotypeFreqchromosome": 0.03595196,"1",
                                           "end": 2300000,
                 "population": "ALL",                         "name": "p36.33",
                              "refAllele": "A",            "stain": "gneg",
                                           "refAlleleFreqstart": 0.049384065,1}],
                             
                             "functionalScore": [{"refHomGenotypeFreqscore": -0.0314080867899999618530273,
                                                        "study"source": "GNOMADcadd_EXOMESraw"},
  
                                                    {"altAllelescore": "G"0.03999999910593033,
                                                  "source": "cadd_scaled"}],
    "altAlleleFreq": 0.9499386,                          "geneDrugInteraction": [],
                             "altHomGenotypeFreqgeneTraitAssociation": 0.92997545,[],
                             
                             "populationFrequencies": [{"hetGenotypeFreqaltAllele": 0.03992629"G",
                                                        "populationaltAlleleFreq": "OTH"0.95061594,
                                                        "refAllelealtHomGenotypeFreq": "A"0.93263996,
                                                        "refAlleleFreqhetGenotypeFreq": 0.05006142303595196,
                                                        "refHomGenotypeFreqpopulation": 0.03009828"ALL",
                                                        "studyrefAllele": "GNOMAD_EXOMESA"},
                                                       { "altAllelerefAlleleFreq": "G"0.049384065,
                                                        "altAlleleFreqrefHomGenotypeFreq": 0.999461031408086,
                                                        "altHomGenotypeFreqstudy": 0.99892205"GNOMAD_EXOMES"},
                                                        {"hetGenotypeFreqaltAllele": 0.0010779734"G",
                                                        "populationaltAlleleFreq": "EAS"0.9499386,
                                                        "refAllelealtHomGenotypeFreq": "A"0.92997545,
                                                        "refAlleleFreqhetGenotypeFreq": 0.000538986703992629,
                                                        "refHomGenotypeFreqpopulation": 0.0"OTH",
                                                        "studyrefAllele": "GNOMAD_EXOMESA"},
                                                       { "altAllelerefAlleleFreq": "G"0.050061423,
                                                        "altAlleleFreqrefHomGenotypeFreq": 0.9508399403009828,
                                                        "altHomGenotypeFreqstudy": 0.9305369"GNOMAD_EXOMES"},
                                                        {"hetGenotypeFreqaltAllele": 0.040606"G",
                                                        "populationaltAlleleFreq": "AMR"0.999461,
                                                        "refAllelealtHomGenotypeFreq": "A"0.99892205,
                                                        "refAlleleFreqhetGenotypeFreq": 0.0491600520010779734,
                                                        "refHomGenotypeFreqpopulation": 0.028857054"EAS",
                                                        "studyrefAllele": "GNOMAD_EXOMESA"},
                                                        {"altAllelerefAlleleFreq": "G"0.0005389867,
                                                        "altAlleleFreqrefHomGenotypeFreq": 0.977950160,
                                                        "altHomGenotypeFreqstudy": 0.9710086"GNOMAD_EXOMES"},
                                                        {"hetGenotypeFreqaltAllele": 0.013883217"G",
                                                        "populationaltAlleleFreq": "ASJ"0.95083994,
                                                        "refAllelealtHomGenotypeFreq": "A"0.9305369,
                                                        "refAlleleFreqhetGenotypeFreq": 0.022049816040606,
                                                        "refHomGenotypeFreqpopulation": 0.015108207"AMR",
                                                        "studyrefAllele": "GNOMAD_EXOMESA"},
                                                        {"altAllelerefAlleleFreq": "G"0.049160052,
                                                        "altAlleleFreqrefHomGenotypeFreq": 0.99145377028857054,
                                                        "altHomGenotypeFreqstudy": 0.98848504"GNOMAD_EXOMES"},
                                                        {"hetGenotypeFreqaltAllele": 0.0059373877"G",
                                                        "populationaltAlleleFreq": "FIN"0.97795016,
                                                        "refAllelealtHomGenotypeFreq": "A"0.9710086,
                                                        "refAlleleFreqhetGenotypeFreq": 0.00854624013883217,
                                                        "refHomGenotypeFreqpopulation": 0.005577546"ASJ",
                                                        "studyrefAllele": "GNOMAD_EXOMESA"},
                                                       { "altAllelerefAlleleFreq": "G"0.022049816,
                                                        "altAlleleFreqrefHomGenotypeFreq": 0.9727796015108207,
                                                        "altHomGenotypeFreqstudy": 0.96255124"GNOMAD_EXOMES"},
                                                        {"hetGenotypeFreqaltAllele": 0.020456737"G",
                                                        "populationaltAlleleFreq": "NFE"0.99145377,
                                                        "refAllelealtHomGenotypeFreq": "A"0.98848504,
                                                        "refAlleleFreqhetGenotypeFreq": 0.0272204150059373877,
                                                        "refHomGenotypeFreqpopulation": 0.016992046"FIN",
                                                        "studyrefAllele": "GNOMAD_EXOMESA"},
                                                       { "altAllelerefAlleleFreq": "G"0.00854624,
                                                        "altAlleleFreqrefHomGenotypeFreq": 0.6074365005577546,
                                                        "altHomGenotypeFreqstudy": 0.47664425"GNOMAD_EXOMES"},
                                                        {"hetGenotypeFreqaltAllele": 0.26158446"G",
                                                        "populationaltAlleleFreq": "AFR"0.9727796,
                                                        "refAllelealtHomGenotypeFreq": "A"0.96255124,
                                                        "refAlleleFreqhetGenotypeFreq": 0.39256352020456737,
                                                        "refHomGenotypeFreqpopulation": 0.2617713"NFE",
                                                        "studyrefAllele": "GNOMAD_EXOMESA"},
                                                       { "altAllelerefAlleleFreq": "G"0.027220415,
                                                        "altAlleleFreqrefHomGenotypeFreq": 0.95853204016992046,
                                                        "altHomGenotypeFreqstudy": 0.94338477"GNOMAD_EXOMES"},
                                                        {"hetGenotypeFreqaltAllele": 0.03029453"G",
                                                        "populationaltAlleleFreq": "MALE"0.6074365,
                                                        "refAllelealtHomGenotypeFreq": "A"0.47664425,
                                                        "refAlleleFreqhetGenotypeFreq": 0.04146797626158446,
                                                        "refHomGenotypeFreqpopulation": 0.02632071"AFR",
                                                        "studyrefAllele": "GNOMAD_EXOMESA"},
                                                        {"altAllelerefAlleleFreq": "G"0.39256352,
                                                        "altAlleleFreqrefHomGenotypeFreq": 0.940914452617713,
                                                        "altHomGenotypeFreqstudy": 0.91947174"GNOMAD_EXOMES"},
                                                        {"hetGenotypeFreqaltAllele": 0.04288538"G",
                                                        "populationaltAlleleFreq": "FEMALE"0.95853204,
                                                        "refAllelealtHomGenotypeFreq": "A"0.94338477,
                                                        "refAlleleFreqhetGenotypeFreq": 0.0590855703029453,
                                                        "refHomGenotypeFreqpopulation": 0.03764288"MALE",
                                                        "studyrefAllele": "GNOMAD_EXOMESA"},
                                                        {"altAllelerefAlleleFreq": "G"0.041467976,
                                                        "altAlleleFreqrefHomGenotypeFreq": 0.8422208402632071,
                                                        "altHomGenotypeFreqstudy": 0.77478045"GNOMAD_EXOMES"},
                                                        {"hetGenotypeFreqaltAllele": 0.1348808"G",
                                                        "populationaltAlleleFreq": "ALL"0.94091445,
                                                        "refAllelealtHomGenotypeFreq": "A"0.91947174,
                                                        "refAlleleFreqhetGenotypeFreq": 0.1577791704288538,
                                                        "refHomGenotypeFreqpopulation": 0.090338774"FEMALE",
                                                        "studyrefAllele": "GNOMAD_GENOMESA"},
                                                       { "altAllelerefAlleleFreq": "G"0.05908557,
                                                        "altAlleleFreqrefHomGenotypeFreq": 0.940425503764288,
                                                        "altHomGenotypeFreqstudy": 0.9191489"GNOMAD_EXOMES"},
                                                        {"hetGenotypeFreqaltAllele": 0.04255319"G",
                                                        "populationaltAlleleFreq": "OTH"0.84222084,
                                                        "refAllelealtHomGenotypeFreq": "A"0.77478045,
                                                        "refAlleleFreqhetGenotypeFreq": 0.059574471348808,
                                                        "refHomGenotypeFreqpopulation": 0.038297873"ALL",
                                                        "studyrefAllele": "GNOMAD_GENOMESA"},
                                                       { "altAllelerefAlleleFreq": "G"0.15777917,
                                                        "altAlleleFreqrefHomGenotypeFreq": 10.0090338774,
                                                        "altHomGenotypeFreqstudy": 1.0"GNOMAD_GENOMES"},
                                                        {"hetGenotypeFreqaltAllele": 0.0"G",
                                                        "populationaltAlleleFreq": "EAS"0.9404255,
                                                        "refAllelealtHomGenotypeFreq": "A"0.9191489,
                                                        "refAlleleFreqhetGenotypeFreq": 0.004255319,
                                                        "refHomGenotypeFreqpopulation": 0.0"OTH",
                                                        "studyrefAllele": "GNOMAD_GENOMESA"},
                                                        {"altAllelerefAlleleFreq": "G"0.05957447,
                                                        "altAlleleFreqrefHomGenotypeFreq": 0.9410377038297873,
                                                        "altHomGenotypeFreqstudy": 0.9103774"GNOMAD_GENOMES"},
                                                        {"hetGenotypeFreqaltAllele": 0.061320756"G",
                                                        "populationaltAlleleFreq": "AMR"1.0,
                                                        "refAllelealtHomGenotypeFreq": "A"1.0,
                                                        "refAlleleFreqhetGenotypeFreq": 0.0589622630,
                                                        "refHomGenotypeFreqpopulation": 0.028301887"EAS",
                                                        "studyrefAllele": "GNOMAD_GENOMESA"},
                                                        {"altAllelerefAlleleFreq": "G"0.0,
                                                        "altAlleleFreqrefHomGenotypeFreq": 0.96721310,
                                                        "altHomGenotypeFreqstudy": 0.9508197"GNOMAD_GENOMES"},
                                                        {"hetGenotypeFreqaltAllele": 0.032786883"G",
                                                        "populationaltAlleleFreq": "ASJ"0.9410377,
                                                        "refAllelealtHomGenotypeFreq": "A"0.9103774,
                                                        "refAlleleFreqhetGenotypeFreq": 0.032786883061320756,
                                                        "refHomGenotypeFreqpopulation": 0.016393442"AMR",
                                                        "studyrefAllele": "GNOMAD_GENOMESA"},
                                                       { "altAllelerefAlleleFreq": "G"0.058962263,
                                                        "altAlleleFreqrefHomGenotypeFreq": 0.9918478028301887,
                                                        "altHomGenotypeFreqstudy": 0.98913044"GNOMAD_GENOMES"},
                                                        {"hetGenotypeFreqaltAllele": 0.0054347827"G",
                                                        "populationaltAlleleFreq": "FIN"0.9672131,
                                                        "refAllelealtHomGenotypeFreq": "A"0.9508197,
                                                        "refAlleleFreqhetGenotypeFreq": 0.008152174032786883,
                                                        "refHomGenotypeFreqpopulation": 0.0054347827"ASJ",
                                                        "studyrefAllele": "GNOMAD_GENOMESA"},
                                                       { "altAllelerefAlleleFreq": "G"0.032786883,
                                                        "altAlleleFreqrefHomGenotypeFreq": 0.9637507016393442,
                                                        "altHomGenotypeFreqstudy": 0.94847214"GNOMAD_GENOMES"},
                                                        {"hetGenotypeFreqaltAllele": 0.03055722"G",
                                                        "populationaltAlleleFreq": "NFE"0.9918478,
                                                        "refAllelealtHomGenotypeFreq": "A"0.98913044,
                                                        "refAlleleFreqhetGenotypeFreq": 0.036249250054347827,
                                                        "refHomGenotypeFreqpopulation": 0.02097064"FIN",
                                                        "studyrefAllele": "GNOMAD_GENOMESA"},
                                                       { "altAllelerefAlleleFreq": "G"0.008152174,
                                                        "altAlleleFreqrefHomGenotypeFreq": 0.58865250054347827,
                                                        "altHomGenotypeFreqstudy": 0.41246733"GNOMAD_GENOMES"},
                                                        {"hetGenotypeFreqaltAllele": 0.3523703"G",
                                                        "populationaltAlleleFreq": "AFR"0.9637507,
                                                        "refAllelealtHomGenotypeFreq": "A"0.94847214,
                                                        "refAlleleFreqhetGenotypeFreq": 0.411347503055722,
                                                        "refHomGenotypeFreqpopulation": 0.23516238"NFE",
                                                        "studyrefAllele": "GNOMAD_GENOMESA"},
                                                        {"altAllelerefAlleleFreq": "G"0.03624925,
                                                        "altAlleleFreqrefHomGenotypeFreq": 0.838147102097064,
                                                        "altHomGenotypeFreqstudy": 0.7682737"GNOMAD_GENOMES"},
                                                        {"hetGenotypeFreqaltAllele": 0.13974673"G",
                                                        "populationaltAlleleFreq": "MALE"0.5886525,
                                                        "refAllelealtHomGenotypeFreq": "A"0.41246733,
                                                        "refAlleleFreqhetGenotypeFreq": 0.161852933523703,
                                                        "refHomGenotypeFreqpopulation": 0.09197956"AFR",
                                                        "studyrefAllele": "GNOMAD_GENOMESA"},
                                                        {"altAllelerefAlleleFreq": "G"0.4113475,
                                                        "altAlleleFreqrefHomGenotypeFreq": 0.8475064623516238,
                                                        "altHomGenotypeFreqstudy": 0.78322285"GNOMAD_GENOMES"},
                                                        {"hetGenotypeFreqaltAllele": 0.12856731"G",
                                                        "populationaltAlleleFreq": "FEMALE"0.8381471,
                                                        "refAllelealtHomGenotypeFreq": "A"0.7682737,
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            "repeat": [{"chromosome": "1",                                          "copyNumberrefHomGenotypeFreq": 20.009197956,
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                             "start": 69511,                              "traitAssociationstudy": [{"additionalProperties": [{"name": "mutationSomaticStatus_in_source_file""GNOMAD_GENOMES"}],
                             
                             "repeat": [{"chromosome": "1",
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                  "somatic "                      "id": "9119",
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                             "alleleOrigin": [],                    "start": 10001},
                               "bibliography": [],        {"chromosome": "1",
                                          "ethnicitycopyNumber": "Z"2.0,
                                         "end": 87112,
        "genomicFeatures": [{"featureType": "gene",                               "id": "14903",
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                             "traitAssociation": [{"xrefsadditionalProperties": [{"symbolname": "8301"}}]mutationSomaticStatus_in_source_file",
                                                   "heritableTraits": [],                          "value": "Confirmed "
                                 "id": "COSM4144171",                                                    "somaticInformation": {"histologySubtype": "neoplasm",somatic "
                                                                                     "primaryHistology": "othervariant"}],
                                                   "alleleOrigin": [],
                            "primarySite": "thyroid",                      "bibliography": [],
                                                   "sampleSourceethnicity": "Z",
                                                   "genomicFeatures": [{"featureType": "gene",
                    "tumourOrigin": ""},                                                    "sourcexrefs": {"namesymbol": "cosmicOR4F5"}},
                                                      "submissions": []}],                {"featureType": "gene",
            "variantTraitAssociation": {"clinvar": [],                                                          "cosmicxrefs": [{"geneNamesymbol": "OR4F58301",
          }}],
                                                          "histologySubtype"heritableTraits": "neoplasm"[],
                                                   "id": "COSM4144171",
                 "mutationId": "COSM4144171",                                 "somaticInformation": {"histologySubtype": "neoplasm",
                                  "mutationSomaticStatus": "Confirmed "                                      "primaryHistology": "other",
                                                       "somatic "                  "primarySite": "thyroid",
                                                                          "sampleSource": "variant",
                                                                          "primaryHistologytumourOrigin": "other"},
                                                   "source": {"name": "cosmic"},
                   "primarySite": "thyroid",                               "submissions": []}]}
				"additionalAttributes": {
                    "opencga": {
             "sampleSource": "",          "attribute": {
                            "annotationId": "CURRENT",
                            "siteSubtyperelease": "",1"
                        }
                    }
                },
                "tumourOrigin":
""}]}}}