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Code Block
$ cellbase/build/bin$ ./cellbase.sh download --data genome,gene


The following option is required: -d, --data:```
    * -d, --data           STRING     Comma data argument is required and is a comma separated list of data to download: genome, gene, gene_disease_association, variation,
                                      variation_functional_score, regulation, protein, conservation, clinical and . 'all' to download
                                      everything
```types to download. See below for the full list.



TypeData sources
genome
  • Ensembl
gene
  • Ensembl
gene_disease_association
  • DGIdb
  • UniProt gene mappings
  • Gene Expression Atlas
  • HPO gene annotation
  • GNomad
variation **
  • 1000 genomes
  • ExAC
  • GoNL
  • UK10K
  • ESP
variation_functional_score
  • CADD
regulation
  • Ensembl
protein
  • UniProt
  • InterPro
  • Polyphen/Sift
conservation **
clinical 
  • PhaseCons
  • PhyloP
  • GERP++
clinical_variants **
  • ClinVar
  • COSMIC
  • HPO
  • DisGeNET
repeats
svs
all **Downloads all of the above

See Download Sources for details on versions and available organisms.

Warning
** Please  Please note that many files are very large and can take several hours to download.

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