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There are three main ways to access OpenCGA data:
- RESTful Web Services and Clients
- Command Line Interface (CLI)
- Web data mining and visualisation
OpenCGA Demo
We have deployed a demo installation to make easy the testing and development for all bioinformaticians and developers.
Data
This demo consists of three projects and five studies. These represents different assembly and type of data such as multi sample VCF, aggregated VCF or family genome or exome. The data
| Project | Study ID and Name | Samples | VCF Files | VCF File Type | Variants |
|---|---|---|---|---|---|
| Population Studies GRCh38 | 1000g Rare Disease GRCh37 | 2,504 | Multi sample | ||
uk10k | Agregated | ||||
| Family Studies GRCh37 | RD38 Rare Disease GRCh38 | 33,180 | 16,591 | Multi sample | |
CG38 Cancer Germline GRCh38 | 9,167 | 9,167 | Single sample | ||
| GRCh38 Somatic | CS38 Cancer Somatic GRCh38 | 9,589 | 9,589 | Somatic |
Credentials
Table of Contents:
| Table of Contents | ||
|---|---|---|
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