OpenCGA publishes a number of images into DockerHub for user ease. These images are based on Alpine JRE images to keep sizes as small as possible, contains OpenCGA binaries, for complete contents of image, please have a look at Dockerfile in github. A typical image name will follow the following structure :
- opencga:{OPENCGA_VERSION_NUMBER}-{VARIANT_STORAGE_FLAVOUR}
- OPENCGA_VERSION_NUMBER will be like 1.4.0, 1.4.1, 2.0 etc
- VARIANT_STORAGE_FLAVOUR can be mongoDB 4.0, hdinshigh, emr etc
- e.g. opencga:1.4.0-mongo4.0
OpenCGA has published a docker image for quick testing and playing without going through hassle to learn, wait and install each and every OpenCGA components. The docker image is available at the public docker registry under the repository opencb/opencga-demo.
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http://OpenCGA-Demo-Container-IP:9090/opencga/webservices/rest/v1 |
How To Create OpenCGA Demo Docker Image From Source Code
Distributed systems with multiple dependencies require a lot of work to setup, install, configure system and developers would like to have a quick way to test their changes locally and quickly with a system mimicking as close as possible to production systems. Following are the steps to create your own opencga demo image from modified oepncga source code :
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