Pre-requisites 

In order to follow this guide you have to install BioNetDB in your system. Please, please follow the steps on installation guide and set it up.

Download test data

Users can download test data from the following link. Download the tar.gz file and uncompress in your system. Once uncompressed, you should see the following files:

• genes.json.gz
• proteins.json.gz
• mirna.csv
• hsapiens.biopax.owl
• 1k.clinvar.json
• 5k.variants.json

Import genomic data

In order to populate Before you query BioNetDB database, you should import you have to populate it by importing your data into the Neo4j database by using . BioNetDB provides a command line . Importing data consists of two stepsinterface to import data. First, you prepare your data, and then, you load into the BioNetDB database:

• Prepare your data, i.e., transform your genomic data files into Neo4j CSV files:
  
  

./bionetdb.sh import -i <input-directory> -o <output-csv-directory> --create-csv-files

• Load the create Neo4j CSV files into the database:
  
  

./bionetdb.sh import -i <csv-directory>