This is the default client configuration file you would get if not maven properties have been set up during the building (see Configuration). Most of this settings apply to command line.
## number of seconds that session remains open
## Default study when -s, --study are empty, e.g. "reference_grch37:1kG_phase3"
## Alias to different studies, these can be fully qualified: user@project:study
## The default organism values can be defined here.
## REST client configuration options
## gRPC configuration options
## Configure the default behaviour when query variants
# each study can have a different format
sessionDuration: the number of seconds the session will be opened in the command line without any interaction
defaultStudy: the study to be used when no study is provided
alias: you can define study aliases, sometimes project and study alias can be too long or maybe there are studies with the same name in different projects. With the study alias setting you can define short names for fully qualified names at OpenCGA: user@project:alias
organism: default organism to be used when creating new Projects, remember that all studies in the same project belong to the same species and assembly
rest: the credentials to RESTful web services. host parameter contains the URL and the port.
grpc: host for gRPC server, this contains URL and port
variant: specific section for variants. unknownGenotype defines the default genotype to be returned for missing genotypes. includeFormats define the sample format data to be returned from the variant query service