{
"id" : {
"string" : "1_229454865_229455276_0:0:0_0:0:0_0"
},
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"fragmentName" : "1",
"improperPlacement" : {
"boolean" : true
},
"duplicateFragment" : {
"boolean" : false
},
"numberReads" : {
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},
"fragmentLength" : {
"int" : -412
},
"readNumber" : {
"int" : 0
},
"failedVendorQualityChecks" : {
"boolean" : false
},
"alignment" : {
"org.ga4gh.models.LinearAlignment" : {
"position" : {
"referenceName" : "1",
"position" : 229455176,
"strand" : "NEG_STRAND"
},
"mappingQuality" : {
"int" : 60
},
"cigar" : [ {
"operation" : "ALIGNMENT_MATCH",
"operationLength" : 100,
"referenceSequence" : null
} ]
}
},
"secondaryAlignment" : {
"boolean" : false
},
"supplementaryAlignment" : {
"boolean" : false
},
"alignedSequence" : {
"string" : "AGTGCTATTTGGATTCATCCCATATGGGCCCCATCTTGTGGTCTGAGGCCTGACAGGGCTCACCTGCAAGCTCGGTTCTCTGCTGTCTTTGATATGGACT"
},
"alignedQuality" : [ 30, 30, 30, 30, 30, 30, 30, 30, 30, 30, 30, 30, 30, 30, 30, 30, 30, 30, 30, 30, 30, 30, 30, 30, 30, 30, 30, 30, 30, 30, 30, 30, 30, 30, 30, 30, 30, 30, 30, 30, 30, 30, 30, 30, 30, 30, 30, 30, 30, 30, 30, 30, 30, 30, 30, 30, 30, 30, 30, 30, 30, 30, 30, 30, 30, 30, 30, 30, 30, 30, 30, 30, 30, 30, 30, 30, 30, 30, 30, 30, 30, 30, 30, 30, 30, 30, 30, 30, 30, 30, 30, 30, 30, 30, 30, 30, 30, 30, 30, 30 ],
"nextMatePosition" : {
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"referenceName" : "1",
"position" : 229454865,
"strand" : "POS_STRAND"
}
},
"info" : {
"AS" : [ "i", "100" ],
"XS" : [ "i", "0" ],
"NM" : [ "i", "0" ]
}
}